Thank you for your reply!
Yes, I just cloned PSI4 from github last friday. So I believe it’s 1.1 version.
I tried ldd PSI4 core.so from some node and get the next message:
./core.so: /usr/lib64/libstdc++.so.6: version
CXXABI_1.3.8' not found (required by ./core.so) ./core.so: /usr/lib64/libstdc++.so.6: version
GLIBCXX_3.4.20’ not found (required by ./core.so)
./core.so: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21’ not found (required by ./core.so)
linux-vdso.so.1 => (0x00007fffe5e37000)
libxc.so => /common/home/ovsyannikov_d/psi/lib/psi4/./…/libxc.so (0x00002b908bc35000)
libgdma.so => /common/home/ovsyannikov_d/psi/lib/psi4/./…/libgdma.so (0x00002b908bf52000)
libderiv.so => /common/home/ovsyannikov_d/psi/lib/psi4/./…/libderiv.so (0x00002b908c202000)
libint.so => /common/home/ovsyannikov_d/psi/lib/psi4/./…/libint.so (0x00002b909a4d1000)
libmkl_rt.so => /common/intel_2017/compilers_and_libraries_2017.0.098/linux/mkl/lib/intel64/libmkl_rt.so (0x00002b909d511000)
libpthread.so.0 => /usr/lib64/libpthread.so.0 (0x00002b909db01000)
libm.so.6 => /usr/lib64/libm.so.6 (0x00002b909dd1d000)
libdl.so.2 => /usr/lib64/libdl.so.2 (0x00002b909e01f000)
libimf.so => not found
libsvml.so => not found
libirng.so => not found
libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00002b909e223000)
libiomp5.so => not found
libgcc_s.so.1 => /usr/lib64/libgcc_s.so.1 (0x00002b909e52b000)
libintlc.so.5 => not found
libc.so.6 => /usr/lib64/libc.so.6 (0x00002b909e741000)
/lib64/ld-linux-x86-64.so.2 (0x00002b90897e7000)
libimf.so => not found
libsvml.so => not found
libirng.so => not found
libintlc.so.5 => not found
libifport.so.5 => not found
libifcoremt.so.5 => not found
libimf.so => not found
libsvml.so => not found
libiomp5.so => not found
libintlc.so.5 => not found
libimf.so => not found
libsvml.so => not found
libirng.so => not found
libintlc.so.5 => not found
libimf.so => not found
libsvml.so => not found
libirng.so => not found
libintlc.so.5 => not found
And on login node PSI4 doesn’t work for now with the next error:
Traceback (most recent call last):
File “/home/ovsyannikov_d/psi/bin/psi4”, line 158, in
import psi4
File “/home/ovsyannikov_d/psi/lib//psi4/init.py”, line 80, in
from .driver import endorsed_plugins
File “/home/ovsyannikov_d/psi/lib//psi4/driver/init.py”, line 31, in
from psi4.driver.molutil import *
File “/home/ovsyannikov_d/psi/lib//psi4/driver/molutil.py”, line 36, in
from psi4.driver.inputparser import process_pubchem_command, pubchemre
File “/home/ovsyannikov_d/psi/lib//psi4/driver/inputparser.py”, line 44, in
from psi4.driver import pubchem
File “/home/ovsyannikov_d/psi/lib//psi4/driver/pubchem.py”, line 53, in
from urllib.request import urlopen, Request
ImportError: No module named request
Conda’s binary works well… but why? maybe, I can link conda’s libraries to the psi4 bin compiled by me? I am so confused…