Scanning dependencies of target libxc_external
Scanning dependencies of target pcmsolver_external
Scanning dependencies of target lapack_external
Scanning dependencies of target pybind11_external
Scanning dependencies of target libint_external
[  2%] Creating directories for 'pcmsolver_external'
[  4%] Creating directories for 'libxc_external'
[  6%] Installing Psi4-detected BLAS/LAPACK
[  8%] Creating directories for 'pybind11_external'
[ 10%] Creating directories for 'libint_external'
-- Install configuration: "Release"
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/TargetLAPACK/TargetLAPACKConfig.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/TargetLAPACK/FindTargetOpenMP.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/TargetLAPACK/FindMathOpenMP.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/TargetLAPACK/TargetLAPACKTargets.cmake
[ 10%] Built target lapack_external
[ 12%] Performing download step (git clone) for 'libint_external'
[ 14%] Performing download step (git clone) for 'pcmsolver_external'
[ 16%] Performing download step (git clone) for 'libxc_external'
[ 18%] Performing download step (git clone) for 'pybind11_external'
Cloning into 'pcmsolver_external'...
Cloning into 'libxc_external'...
Cloning into 'libint_external'...
Cloning into 'pybind11_external'...
Note: checking out '024738c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 024738c... Merge pull request #82 from robertodr/v1-ninja
[ 20%] No patch step for 'libint_external'
[ 22%] No update step for 'libint_external'
[ 24%] Performing configure step for 'libint_external'
loading initial cache file /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/tmp/libint_external-cache-Release.cmake
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Setting option CMAKE_BUILD_TYPE: Release
-- Setting option MAX_AM_ERI: 5
-- Setting option BUILD_SHARED_LIBS: OFF
-- Setting option BUILD_FPIC: ON
-- Setting option ENABLE_GENERIC: OFF
-- Setting option ENABLE_XHOST: ON
-- Performing Test CMAKE_C_FLAGS [-xHost] - Failed
-- Performing Test CMAKE_C_FLAGS [-march=native] - Success, Appending
-- Performing Test CMAKE_CXX_FLAGS [-xHost] - Failed
-- Performing Test CMAKE_CXX_FLAGS [-march=native] - Success, Appending
-- Setting option MERGE_LIBDERIV_INCLUDEDIR: ON
-- Configuring done
-- Generating done
-- Build files have been written to: /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build
[ 26%] Performing build step for 'libint_external'
Scanning dependencies of target libint_compiler
[  3%] Creating directories for 'libint_compiler'
[  6%] No download step for 'libint_compiler'
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[ 15%] Performing configure step for 'libint_compiler'
loading initial cache file /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build/src/libint_compiler-prefix/tmp/libint_compiler-cache-Release.cmake
-- The C compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test standard_math_library_linked_to_automatically
-- Performing Test standard_math_library_linked_to_automatically - Failed
-- Performing Test standard_math_library_linked_to_as_m
-- Performing Test standard_math_library_linked_to_as_m - Success
-- Configuring done
-- Generating done
-- Build files have been written to: /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build/src/libint_compiler-prefix/src/libint_compiler-build
[ 18%] Performing build step for 'libint_compiler'
Scanning dependencies of target libint_compiler
[ 12%] Building C object CMakeFiles/libint_compiler.dir/emit_hrr_build_macro.c.o
[ 37%] Building C object CMakeFiles/libint_compiler.dir/emit_hrr_build.c.o
[ 37%] Building C object CMakeFiles/libint_compiler.dir/emit_order.c.o
[ 50%] Building C object CMakeFiles/libint_compiler.dir/emit_vrr_build.c.o
[ 62%] Building C object CMakeFiles/libint_compiler.dir/mem_man.c.o
[ 75%] Building C object CMakeFiles/libint_compiler.dir/build_libint.c.o
[ 87%] Building C object CMakeFiles/libint_compiler.dir/emit_vrr_build_macro.c.o
[100%] Linking C executable libint_compiler
[100%] Built target libint_compiler
[ 21%] Performing install step for 'libint_compiler'
make[6]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
[100%] Built target libint_compiler
Install the project...
-- Install configuration: "Release"
-- Installing: /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build/stage/usr/local/psi4/bin/libint_compiler
[ 25%] Completed 'libint_compiler'
[ 25%] Built target libint_compiler
Scanning dependencies of target libint_library
[ 28%] Creating directories for 'libint_library'
[ 31%] Performing download step for 'libint_library'
-- libint_library download command succeeded.  See also /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build/src/libint_library-prefix/src/libint_library-stamp/libint_library-download-*.log
[ 34%] No patch step for 'libint_library'
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[ 40%] Performing configure step for 'libint_library'
loading initial cache file /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build/src/libint_library-prefix/tmp/libint_library-cache-Release.cmake
Note: checking out 'v2.2.3'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 8edc147... changelog for v2.2.3
Submodule 'tools/clang' (https://github.com/wjakob/clang-cindex-python3) registered for path 'tools/clang'
Cloning into 'tools/clang'...
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
Submodule path 'tools/clang': checked out '6a00cbc4a9b8e68b71caf7f774b3f9c753ae84d5'
[ 28%] No patch step for 'pybind11_external'
[ 30%] No update step for 'pybind11_external'
[ 32%] Performing configure step for 'pybind11_external'
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- The CXX compiler identification is GNU 5.4.0
-- Check for working CXX compiler: /usr/bin/c++
-- Detecting CXX compile features
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Detecting CXX compile features - done
-- Found PythonInterp: /home/john/anaconda3/bin/python3.6 (found version "3.6.4") 
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    LIBC_INTERJECT


-- Build files have been written to: /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build/libint-src
[ 43%] Performing build step for 'libint_library'
-- Found PythonLibs: /home/john/anaconda3/lib/libpython3.6m.so
-- pybind11 v2.2.3
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_C_COMPILER


-- Build files have been written to: /home/john/psi4pcmbuild/external/upstream/pybind11/pybind11_external-prefix/src/pybind11_external-build
[ 34%] Performing build step for 'pybind11_external'
[ 36%] Performing install step for 'pybind11_external'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
Install the project...
-- Install configuration: "Release"
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/numpy.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/stl.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/detail
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/detail/internals.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/detail/typeid.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/detail/descr.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/detail/common.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/detail/class.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/detail/init.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/operators.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/embed.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/eval.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/pybind11.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/chrono.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/iostream.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/options.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/cast.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/complex.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/common.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/eigen.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/functional.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/attr.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/pytypes.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/stl_bind.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/include/pybind11/buffer_info.h
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/pybind11/pybind11Config.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/pybind11/pybind11ConfigVersion.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/pybind11/FindPythonLibsNew.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/pybind11/pybind11Tools.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/pybind11/pybind11Targets.cmake
[ 38%] Completed 'pybind11_external'
Scanning dependencies of target int
[ 38%] Built target pybind11_external
Scanning dependencies of target gau2grid_external
[ 40%] Creating directories for 'gau2grid_external'
[ 42%] Performing download step (git clone) for 'gau2grid_external'
Cloning into 'gau2grid_external'...
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Note: checking out 'v1.1.0'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 9fc4f08... Bumps version to 1.1
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-- Performing Test CMAKE_C_FLAGS [-march=native] - Success, Appending
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Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/home/john/psi4pcmbuild/external/upstream/gau2grid/gau2grid_external-prefix/src/gau2grid_external/gau2grid/__init__.py", line 5, in <module>
    from . import RSH
  File "/home/john/psi4pcmbuild/external/upstream/gau2grid/gau2grid_external-prefix/src/gau2grid_external/gau2grid/RSH.py", line 6, in <module>
    import numpy as np
ImportError: No module named numpy
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external/upstream/gau2grid/CMakeFiles/gau2grid_external.dir/build.make:112: recipe for target 'external/upstream/gau2grid/gau2grid_external-prefix/src/gau2grid_external-stamp/gau2grid_external-build' failed
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make[1]: *** Waiting for unfinished jobs....
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Note: checking out 'v1.2.1'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at fa7c826... Re-bump version to v1.2.1
[ 55%] No patch step for 'pcmsolver_external'
[ 55%] No update step for 'pcmsolver_external'
[ 57%] Performing configure step for 'pcmsolver_external'
loading initial cache file /home/john/psi4pcmbuild/external/upstream/pcmsolver/pcmsolver_external-prefix/tmp/pcmsolver_external-cache-Release.cmake
-- The CXX compiler identification is GNU 5.4.0
-- The C compiler identification is GNU 5.4.0
-- The Fortran compiler identification is GNU 5.4.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Setting option ENABLE_CXX11_SUPPORT: ON
-- Using C++11 standard
-- Turning off extended diagnostic flags.
-- Setting (unspecified) option ENABLE_GPERFTOOLS: OFF
-- Found PythonInterp: /usr/bin/python2.7 (found version "2.7.12") 
-- Setting option PYMOD_INSTALL_LIBDIR: /
-- Could NOT find Boost
--   No libraries required, installing headers
-- Eigen 3.3.2 is located here: /home/john/psi4pcmbuild/external/upstream/pcmsolver/pcmsolver_external-prefix/src/pcmsolver_external/external/eigen3/include/eigen3
-- Found ZLIB: /home/john/anaconda3/lib/libz.so (found version "1.2.11") 
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done
-- Build files have been written to: /home/john/psi4pcmbuild/external/upstream/pcmsolver/pcmsolver_external-prefix/src/pcmsolver_external-build
[ 59%] Performing build step for 'pcmsolver_external'
Scanning dependencies of target custom_boost
Scanning dependencies of target generate-config-hpp
Scanning dependencies of target update_version
[  2%] Unpacking Boost
[  4%] Generating version info
[  4%] Built target generate-config-hpp
Defining release version: 1.2.1+fa7c826 (recorded and computed)
1.2.1 {HEAD} fa7c826 1.2.1.0  release 1.2.1 <-- 1.2.1+fa7c826
[  4%] Built target update_version
[  6%] Generating user-config.jam
[  8%] Installing Boost headers
[ 10%] Clean-up Boost
[ 10%] Built target custom_boost
Scanning dependencies of target pcm-objlib
[ 12%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_precision.f90.o
[ 14%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_print.f90.o
[ 17%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_symmetry.f90.o
[ 19%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_dblas.f90.o
[ 21%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_dlapack.f90.o
[ 23%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_utils.f90.o
[ 25%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_cavity.F90.o
Already on 'libxc4retweaked'
Your branch is up-to-date with 'origin/libxc4retweaked'.
[ 63%] No patch step for 'libxc_external'
[ 63%] No update step for 'libxc_external'
[ 65%] Performing configure step for 'libxc_external'
loading initial cache file /home/john/psi4pcmbuild/external/upstream/libxc/libxc_external-prefix/tmp/libxc_external-cache-Release.cmake
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-- Installing: /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build/stage/usr/local/psi4/include/libint/d1hrr_header.h
-- Installing: /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build/stage/usr/local/psi4/include/libint/deriv_header.h
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-- Installing: /home/john/psi4pcmbuild/external/upstream/libint/libint_external-prefix/src/libint_external-build/stage/usr/local/psi4/share/cmake/Libint/LibintderivTargets.cmake
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[100%] Completed 'libderiv_library'
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make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
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-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/Libxc/LibxcConfigVersion.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/Libxc/LibxcTargets.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/share/cmake/Libxc/LibxcTargets-release.cmake
-- Installing: /home/john/psi4pcmbuild/stage/usr/local/psi4/lib/pkgconfig/libxc.pc/libxc.pc
[ 79%] Completed 'libxc_external'
[ 79%] Built target libxc_external
Makefile:140: recipe for target 'all' failed
make: *** [all] Error 2